RNA-seq Differential Expression Analysis

This page presents expression results obtained through differential analysis of RNA-seq

Instrument:
Illumina NovaSeq 6000
SRA Experiments:
4
Submitted by:
Yunnan Academy of Forestry and Grassland
Registration date:
28-Mar-2023

Overall design: RNA-Seq technology was used to compare the transcriptomic profiles of the avocado callus tolerant line L3 (capable to survive in the presence of 80% CF) and control line AN-9 (not exposed to CF), after 24 hours of growth in a medium containing 40% CF.

Instrument:
Illumina NovaSeq 6000
SRA Experiments:
12
Submitted by:
Biotechnology, Department of Genomics and Biotechnology, IFAPA
Registration date:
27-Mar-2023

Overall design: TRANSCRIPTOMIC ANALYSIS OF AVOCADO HASS FRUIT (Persea americana Mill) IN THE INTERACTION SYSTEM AVOCADO FRUIT-CHITOSAN

Instrument:
Illumina NovaSeq 6000
SRA Experiments:
8
Submitted by:
Instituto Tecnologico de Tepic and LANGEBIO
Registration date:
28-Sep-2017

Overall design: This study aims to analyze the avocado transcriptome in interaction with highly polymerized agave fructans to see the molecular response of the fruit.

Instrument:
Illumina NovaSeq 6000
SRA Experiments:
24
Submitted by:
Instituto Tecnologico Nacional de Mexico campus Tepic
Registration date:
22-Aug-2022

Overall design: In this work, we established an in vitro pathosystem using Hass avocado stems inoculated with Fusarium kuroshium to investigate differential gene expression during 1,4, 7- and 14-days post inoculation.

Instrument:
Illumina NextSeq 500
SRA Experiments:
24
Submitted by:
Instituto de Ecologia A.C. (INECOL)
Registration date:
5-Aug-2020

Overall design: Transcriptome experiment to show the molecular mechanisms that are used by the avocado to perceive and react to the oviposition of Anastrepha ludens.

Instrument:
Illumina NextSeq 500
SRA Experiments:
24
Submitted by:
Instituto de Ecologia A.C. (INECOL)
Registration date:
25-Jun-2019

Overall design: Response mechanisms of Hass avocado under 1-methylcyclopropene (1-MCP) application at different maturity stages during cold storage

Instrument:
Illumina HiSeq 4000
SRA Experiments:
36
Submitted by:
Agrigenomics Lab
Registration date:
14-Jun-2022

Publication: Olivares D et al., "Response Mechanisms of 'Hass' Avocado to Sequential 1-methylcyclopropene Applications at Different Maturity Stages during Cold Storage", Plants, 2022;11(13)