FastQCFastQC Report
Fri 15 Dec 2023
SRR6116333_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6116333_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16596262
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGACATGTGTGCGAGTCGACGGGCGAGTAAACCCGTAAGGCGCAAGGAA257710.15528195445456333No Hit
CTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTG213160.12843856044210436No Hit
CCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCA191360.11530307246294376No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)