FastQCFastQC Report
Fri 5 Jan 2024
SRR9595469_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR9595469_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21735769
Sequences flagged as poor quality0
Sequence length35-151
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGATGTATCTCGTATGC1745880.8032290000873675TruSeq Adapter, Index 2 (100% over 50bp)
CCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAA448970.20655813925884106No Hit
CCGCAGGCTCCACTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGTTTC352030.16195884304806515No Hit
CTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAG351050.1615079733318844No Hit
CCCGACTGTCCCTGTTAATCATTACTCCGGTCCCGAAGGCCAACACAATA270800.1245872644303498No Hit
GTCTGACATGTGTGCGAGTCGACGGGCGAGTAAACCCGTAAGGCGCAAGG265220.12202006747495339No Hit
CTGACATGTGTGCGAGTCGACGGGCGAGTAAACCCGTAAGGCGCAAGGAA245670.11302567670828668No Hit
CGACGGGCGAGTAAACCCGTAAGGCGCAAGGAAGCTGACTGGCGGGATCC230270.10594058116830372No Hit
CCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCA226140.10404048736439919No Hit
CCGGAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGTGTCCTAAG220810.10158830819374277No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)