FastQCFastQC Report
Fri 5 Jan 2024
SRR9595470_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR9595470_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18952739
Sequences flagged as poor quality0
Sequence length35-151
%GC47

[WARN]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAA341710.1802958400893929No Hit
CTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAG280240.14786253322013246No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTTAGGCATCTCGTATGC263040.1387873277841266TruSeq Adapter, Index 3 (100% over 50bp)
CCGCAGGCTCCACTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGTTTC224940.1186846924869276No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)