FastQCFastQC Report
Wed 3 Jan 2024
SRR9595471_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR9595471_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24788238
Sequences flagged as poor quality0
Sequence length35-151
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTTTCGGAATCTCGTAT418800.16895109688716076TruSeq Adapter, Index 21 (97% over 40bp)
CCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAA396160.15981773291026172No Hit
CTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAG335070.13517298002383227No Hit
CCGCAGGCTCCACTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGTTTC280730.11325129281072742No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)