FastQCFastQC Report
Wed 3 Jan 2024
SRR9595477_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR9595477_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24340724
Sequences flagged as poor quality0
Sequence length35-151
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTAATCTCGTATGC2103740.864288178116641TruSeq Adapter, Index 12 (100% over 50bp)
CCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAA302610.12432251398931271No Hit
CTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAG244050.10026406774095956No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)