FastQCFastQC Report
Wed 3 Jan 2024
SRR9595478_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR9595478_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26248477
Sequences flagged as poor quality0
Sequence length35-151
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAG780620.2973963022692707No Hit
CCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAA771330.2938570493061369No Hit
CCCGACTGTCCCTGTTAATCATTACTCCGGTCCCGAAGGCCAACACAATA718100.27357777748400414No Hit
CCGGAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGTGTCCTAAG513160.1955008665836117No Hit
CCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCA503900.19197304285501973No Hit
CCCAACTTTCGTTCTTGATTAATGAAAACATCCTTGGCAAATGCTTTCGC398330.15175356650216315No Hit
TGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGT373370.1422444433633235No Hit
GCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTA372790.1420234781621806No Hit
CTGACATGTGTGCGAGTCGACGGGCGAGTAAACCCGTAAGGCGCAAGGAA355400.13539833187274064No Hit
CTTACCAGGTCCAGACATAGTAAGGATTGACAGACTGAGAGCTCTTTCTT340990.12990848954779358No Hit
CCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCACAGTAGGCCC302300.1151685867336227No Hit
GTCTGACATGTGTGCGAGTCGACGGGCGAGTAAACCCGTAAGGCGCAAGG295730.11266558436895215No Hit
CCGCAGGCTCCACTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGTTTC291600.11109215974702076No Hit
CGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCT288390.10986923165104018No Hit
GGCGTGGGCACCCGCTGAATTTAAGCATATCAATAAGCGGAGGAGAAGAA287960.10970541262260664No Hit
CCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT275800.10507276288830014No Hit
CACGCTTTCACGGTTCGTATTCGTACTGGAAATCAGAATCAAACGAGCTT273820.10431843340853644No Hit
CAGGGACGTAGTCAACGCGAGCTGATGACTCGCGATTACTAGGAATTCCT272960.10399079535166936No Hit
ACCAGGTCCAGACATAGTAAGGATTGACAGACTGAGAGCTCTTTCTTGAT271280.10335075821732438No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)