FastQCFastQC Report
Wed 3 Jan 2024
SRR9595480_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR9595480_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22788621
Sequences flagged as poor quality0
Sequence length35-151
%GC50

[WARN]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACGATCTCGTATGC807410.35430401865913697TruSeq Adapter, Index 1 (100% over 50bp)
CCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAA554950.24352065884109442No Hit
CTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAG515940.22640246638881747No Hit
CCGCAGGCTCCACTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGTTTC499280.21909180024539443No Hit
CCGGAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGTGTCCTAAG333310.1462615925728898No Hit
CCCGACTGTCCCTGTTAATCATTACTCCGGTCCCGAAGGCCAACACAATA327400.14366819299860223No Hit
CTGACATGTGTGCGAGTCGACGGGCGAGTAAACCCGTAAGGCGCAAGGAA301810.13243890448658566No Hit
TGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGT270680.11877857813335875No Hit
CTTACCAGGTCCAGACATAGTAAGGATTGACAGACTGAGAGCTCTTTCTT258700.11352156850561515No Hit
GTCTGACATGTGTGCGAGTCGACGGGCGAGTAAACCCGTAAGGCGCAAGG250470.10991011698338393No Hit
CCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCA248790.10917290695211439No Hit
CGACGGGCGAGTAAACCCGTAAGGCGCAAGGAAGCTGACTGGCGGGATCC232970.10223084582432611No Hit
CCCAACTTTCGTTCTTGATTAATGAAAACATCCTTGGCAAATGCTTTCGC231880.10175253693499048No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)