FastQCFastQC Report
Wed 3 Jan 2024
SRR9595481_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR9595481_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26782536
Sequences flagged as poor quality0
Sequence length35-151
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCCGTCCCGATCTCGTAT14897675.5624568188763TruSeq Adapter, Index 16 (97% over 40bp)
CATCGGAAGAGCACACGTCTGAACTCCAGTCACCCGTCCCGATCTCGTAT407760.15224846519388605TruSeq Adapter, Index 16 (97% over 40bp)
GTACTGGATGCATCTGCAGGATATCGCGGCCGCAGAAGACCTAAGCTAGC379100.14154746212233224No Hit
AGTATGGCCCGGGGGATCCGTATACGTTTCTAATTTGTAGTTAACGGTTG367690.13728722328609957No Hit
TATCGGAAGAGCACACGTCTGAACTCCAGTCACCCGTCCCGATCTCGTAT344210.12852031637332625TruSeq Adapter, Index 16 (97% over 40bp)
AATCGGAAGAGCACACGTCTGAACTCCAGTCACCCGTCCCGATCTCGTAT295460.11031815657785357TruSeq Adapter, Index 16 (97% over 40bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)