FastQCFastQC Report
Wed 3 Jan 2024
SRR9595482_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR9595482_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28356601
Sequences flagged as poor quality0
Sequence length35-151
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAA981770.3462227366389928No Hit
CTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAG906630.31972449730487795No Hit
CCCGACTGTCCCTGTTAATCATTACTCCGGTCCCGAAGGCCAACACAATA760540.26820562873526343No Hit
CCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCA671720.2368831158572214No Hit
CCGGAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGTGTCCTAAG656990.23168855815970327No Hit
TGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGT520710.18362920153935233No Hit
CCGCAGGCTCCACTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGTTTC508900.17946438644039178No Hit
CTTACCAGGTCCAGACATAGTAAGGATTGACAGACTGAGAGCTCTTTCTT454020.16011086801270716No Hit
CTGACATGTGTGCGAGTCGACGGGCGAGTAAACCCGTAAGGCGCAAGGAA452540.1595889436819314No Hit
CCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCACAGTAGGCCC450650.15892243220546778No Hit
GCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTA446810.15756825015804962No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCAGATCATCTCGTATGC442420.15602010974446479TruSeq Adapter, Index 7 (100% over 50bp)
CCCAACTTTCGTTCTTGATTAATGAAAACATCCTTGGCAAATGCTTTCGC409320.1443473426169801No Hit
GTCTGACATGTGTGCGAGTCGACGGGCGAGTAAACCCGTAAGGCGCAAGG393740.13885303108084074No Hit
CCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT385470.13593660255684384No Hit
ACCAGGTCCAGACATAGTAAGGATTGACAGACTGAGAGCTCTTTCTTGAT367300.12952892344184694No Hit
CTCGATTCCGTGGCGCGGCTCAACGGAGCAGCCGCGCCGTCCTACCTATT361710.12755760113844392No Hit
CGACGGGCGAGTAAACCCGTAAGGCGCAAGGAAGCTGACTGGCGGGATCC344150.12136503948410461No Hit
CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATT318380.11227720840025926No Hit
CTCCTACTCATCGGGGCATGGCAATCGCCCCGACGGCCGGGTATGGGTCG287460.10137322170594423No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)