FastQCFastQC Report
Wed 3 Jan 2024
SRR9595484_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR9595484_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24007275
Sequences flagged as poor quality0
Sequence length35-151
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAA971310.4045898586990819No Hit
CTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAG870590.36263590932331974No Hit
TGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGT359450.14972544780696684No Hit
CCGCAGGCTCCACTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGTTTC354090.14749279124765305No Hit
CCGGAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGTGTCCTAAG323140.13460086577922734No Hit
CTTACCAGGTCCAGACATAGTAAGGATTGACAGACTGAGAGCTCTTTCTT305470.12724059686074324No Hit
CCCGACTGTCCCTGTTAATCATTACTCCGGTCCCGAAGGCCAACACAATA301170.12544947312845794No Hit
CCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCACAGTAGGCCC267560.11144955018843247No Hit
CCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT244270.10174832420589176No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)