FastQCFastQC Report
Thu 4 Jan 2024
SRR9595485_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR9595485_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21610206
Sequences flagged as poor quality0
Sequence length35-151
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCAATATCTCGTATGC1783490.825299860630667TruSeq Adapter, Index 6 (100% over 50bp)
CCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAA730170.3378820174134388No Hit
CTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAG487940.2257914616825032No Hit
CCGCAGGCTCCACTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGTTTC353070.16338113574669302No Hit
CTTACCAGGTCCAGACATAGTAAGGATTGACAGACTGAGAGCTCTTTCTT288940.13370534274407195No Hit
CCGGAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGTGTCCTAAG270540.1251908473246391No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)