FastQCFastQC Report
Wed 3 Jan 2024
SRR9595489_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR9595489_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24061770
Sequences flagged as poor quality0
Sequence length35-151
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAA480450.1996735900974866No Hit
CTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAG450040.1870352846029199No Hit
CCCGACTGTCCCTGTTAATCATTACTCCGGTCCCGAAGGCCAACACAATA306090.12721009302308184No Hit
CCGGAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGTGTCCTAAG259710.10793470305800446No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)