FastQCFastQC Report
Wed 3 Jan 2024
SRR9595490_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR9595490_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32812631
Sequences flagged as poor quality0
Sequence length35-151
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTGACCAATCTCGTATGC1914750.5835405274267705TruSeq Adapter, Index 4 (100% over 50bp)
CCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAA444620.13550269711685115No Hit
CTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAG346270.10552948344800513No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)