FastQCFastQC Report
Wed 20 Dec 2023
SRR12391887_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR12391887_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16039375
Sequences flagged as poor quality0
Sequence length35-151
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACTGATATATCTCGTAT488680.30467521334216574TruSeq Adapter, Index 25 (97% over 44bp)
CCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAA262680.1637719674239177No Hit
CCGCAGGCTCCACTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGTTTC196700.12263570120406811No Hit
CTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAG174770.10896309862447881No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)