FastQCFastQC Report
Wed 20 Dec 2023
SRR12391888_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR12391888_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16789053
Sequences flagged as poor quality0
Sequence length35-151
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAA533830.3179631394337727No Hit
CTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAG421680.25116366003490487No Hit
CCCGACTGTCCCTGTTAATCATTACTCCGGTCCCGAAGGCCAACACAATA277230.1651254540681955No Hit
CCGGAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGTGTCCTAAG256470.15276025395833823No Hit
CCGCAGGCTCCACTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGTTTC250570.1492460593221071No Hit
TGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGT247610.14748300574189624No Hit
CTTACCAGGTCCAGACATAGTAAGGATTGACAGACTGAGAGCTCTTTCTT234230.1395135270583755No Hit
CCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCA225310.13420054126936165No Hit
GCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTA221390.13186568652800132No Hit
CTGACATGTGTGCGAGTCGACGGGCGAGTAAACCCGTAAGGCGCAAGGAA212240.12641570671079544No Hit
CCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCACAGTAGGCCC193840.11545618445543057No Hit
CCCAACTTTCGTTCTTGATTAATGAAAACATCCTTGGCAAATGCTTTCGC177670.10582490864731917No Hit
CCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT169900.10119689299926565No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)