FastQCFastQC Report
Tue 19 Dec 2023
SRR12391890_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR12391890_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20644694
Sequences flagged as poor quality0
Sequence length35-151
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAA833290.4036339797528605No Hit
CTTACCAGGTCCAGACATAGTAAGGATTGACAGACTGAGAGCTCTTTCTT380960.18453167675917115No Hit
CCGCAGGCTCCACTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGTTTC371080.1797459434370885No Hit
CTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAG336030.1627682154068256No Hit
CCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCA311200.15074091192632838No Hit
GCCGCAGGCTCCACTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGTTT303200.14686582421614No Hit
CCCGACTGTCCCTGTTAATCATTACTCCGGTCCCGAAGGCCAACACAATA228470.11066766114334269No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN212690.10302405063499609No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)