FastQCFastQC Report
Tue 19 Dec 2023
SRR12391891_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR12391891_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29952310
Sequences flagged as poor quality0
Sequence length35-151
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCGACTGTCCCTGTTAATCATTACTCCGGTCCCGAAGGCCAACACAATA1563830.5221066421922048No Hit
CTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAG1263920.42197747018510423No Hit
CCGGAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGTGTCCTAAG1235360.4124423124627115No Hit
CCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAA1233800.4119214845198918No Hit
CCCAACTTTCGTTCTTGATTAATGAAAACATCCTTGGCAAATGCTTTCGC1161870.3879066422589777No Hit
CGCGTGTTTAGCTTGGATTCTGACTTAGAGGCGTTCAGTCATAATCCGAC684450.2285132599121737No Hit
CTTACCAGGTCCAGACATAGTAAGGATTGACAGACTGAGAGCTCTTTCTT668430.2231647575762938No Hit
TGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGT644550.21519208368236037No Hit
CCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCA633000.21133595372109862No Hit
CTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGA593790.19824514369676327No Hit
CTCCTACTCATCGGGGCATGGCAATCGCCCCGACGGCCGGGTATGGGTCG584080.19500332361677614No Hit
GCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTA571650.1908533932775135No Hit
CTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAGCGCCGGTGGTGCGG557910.1862661010119086No Hit
CCAACTTTCGTTCTTGATTAATGAAAACATCCTTGGCAAATGCTTTCGCA557430.18610584626027174No Hit
GTCTGACATGTGTGCGAGTCGACGGGCGAGTAAACCCGTAAGGCGCAAGG548230.18303429685389874No Hit
CACGCTTTCACGGTTCGTATTCGTACTGGAAATCAGAATCAAACGAGCTT534920.1785905661366352No Hit
CGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCT532980.17794286984876959No Hit
CTCGATTCCGTGGCGCGGCTCAACGGAGCAGCCGCGCCGTCCTACCTATT532770.17787275839492847No Hit
GTTAATCATTACTCCGGTCCCGAAGGCCAACACAATAGGACCGAAATCCT483140.1613030848038098No Hit
CTTCCGTCAATTCCTTTAAGTTTCAGCCTTGCGACCATACTCCCCCCGGA478740.1598340829138053No Hit
CCCTCTTCGGCCTTCAAAGTTCTCATTTGAATATTTGCTACTACCACCAA467790.15617827139208962No Hit
CTGACATGTGTGCGAGTCGACGGGCGAGTAAACCCGTAAGGCGCAAGGAA456440.15238891424400988No Hit
CGCGGCTGCTGGCACCAGACTTGCCCTCCAATGGATCCTCGTTAAGGGAT448000.14957110152772857No Hit
CCCCAACTTTCGTTCTTGATTAATGAAAACATCCTTGGCAAATGCTTTCG442240.14764804450808636No Hit
CCCGGCTTCCGGTTCATCCCGCATCGCCAGTTCTGCTTACCAAAAATGGC440240.14698031637626613No Hit
CCGAAGGCCAACACAATAGGACCGAAATCCTGTGATGTTATCCCATGCTA428390.14302402719523136No Hit
CTGTGATGTTATCCCATGCTAATGTATCCAGAGCGTAGGCTTGCTTTGAG424300.14165852316565902No Hit
CTCCAATGGATCCTCGTTAAGGGATTTAGATTGTACTCATTCCAATTACC411690.13744849729453254No Hit
CCCCGACTGTCCCTGTTAATCATTACTCCGGTCCCGAAGGCCAACACAAT399700.13344546714427033No Hit
CCTCGCGGTACTTGTTCGCTATCGGTCTCTCGCCGGTATTTAGCCTTGGA378980.12652780369861288No Hit
GGCGTGGGCACCCGCTGAATTTAAGCATATCAATAAGCGGAGGAGAAGAA362050.12087548506275476No Hit
CTCCGTCACCCGTCACCACCACAGTAGGCCCCTATCCTACCGTCGAAAGT360420.12033128663532129No Hit
CAAAAGGGTAAAAGCTCGTTTGATTCTGATTTCCAGTACGAATACGAACC356260.11894241212113522No Hit
ACCAGGTCCAGACATAGTAAGGATTGACAGACTGAGAGCTCTTTCTTGAT346090.11554701457082941No Hit
CCGGCTTCCGGTTCATCCCGCATCGCCAGTTCTGCTTACCAAAAATGGCC345520.11535671205326067No Hit
CCCCACCTGACAATGTCTTCCGCCCGGATCGGCCCGCCGAGGCGGGCCTT341510.11401791714896115No Hit
CCAAGATCCGCACCGACGGCCGCTCCGCCCGGGCTCGCGCCCCGGGTTTT335740.11209152148865979No Hit
CCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCACAGTAGGCCC333220.11125018404256634No Hit
CTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACAC329670.11006496660858545No Hit
CCCGCATCGCCAGTTCTGCTTACCAAAAATGGCCCACTTGGAGCTCTCGA324330.10828213249662547No Hit
GCGGCGGGCGCGAGCGCCGCGTGTTTAGCTTGGATTCTGACTTAGAGGCG323880.1081318936669659No Hit
CTGCAAAGGATTCTGCCCGCCGTCCGGTCGAAATTAATCTTCAAGGCGGC318690.10639913916489245No Hit
CCCGGAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGTGTCCTAA317870.10612537063084616No Hit
CGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCC315200.10523395357486617No Hit
CGAGGATCCATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCA314970.10515716483970686No Hit
CCGACTGTCCCTGTTAATCATTACTCCGGTCCCGAAGGCCAACACAATAG313550.1046830778661145No Hit
CTGATTTCCAGTACGAATACGAACCGTGAAAGCGTGGCCTATCGATCCTT310130.10354126276070191No Hit
CTCGTCCCTTCTGCCGGCGATTCGTGCCTTGCCTTAACTGGCCGGGCCGC310060.10351789227608821No Hit
CCACGCTTTCACGGTTCGTATTCGTACTGGAAATCAGAATCAAACGAGCT304780.10175509000808286No Hit
CCCTGTTAATCATTACTCCGGTCCCGAAGGCCAACACAATAGGACCGAAA302820.10110071643889905No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)