FastQCFastQC Report
Tue 19 Dec 2023
SRR12391904_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR12391904_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19613829
Sequences flagged as poor quality0
Sequence length35-151
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAA2897301.4771720503936279No Hit
CTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAG1813540.9246231319748938No Hit
CTTACCAGGTCCAGACATAGTAAGGATTGACAGACTGAGAGCTCTTTCTT1456730.7427055675870325No Hit
CCGGAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGTGTCCTAAG1152770.5877332773728169No Hit
CCCGACTGTCCCTGTTAATCATTACTCCGGTCCCGAAGGCCAACACAATA1105360.5635615564915958No Hit
CTCCAATGGATCCTCGTTAAGGGATTTAGATTGTACTCATTCCAATTACC906220.4620311515920731No Hit
TGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGT871730.4444466197803601No Hit
CCCAACTTTCGTTCTTGATTAATGAAAACATCCTTGGCAAATGCTTTCGC861650.43930738867969127No Hit
CCGCAGGCTCCACTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGTTTC645830.3292727799350142No Hit
CAGGGACGTAGTCAACGCGAGCTGATGACTCGCGATTACTAGGAATTCCT589500.30055324740518535No Hit
CCCCAACTTTCGTTCTTGATTAATGAAAACATCCTTGGCAAATGCTTTCG578070.2947257264249627No Hit
TTACCAGGTCCAGACATAGTAAGGATTGACAGACTGAGAGCTCTTTCTTG574630.29297186184298846No Hit
CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATT513190.26164702465795947No Hit
GCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTA512430.26125954294798837No Hit
CTTGTTACGACTTCTCCTTCCTCTAAATGATAAGGTTCAGTGGACTTCTC511720.26089755345577853No Hit
CCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCACAGTAGGCCC489220.24942605546321425No Hit
CCTAATTCTCCGTCACCCGTCACCACCACAGTAGGCCCCTATCCTACCGT470810.2400398208835205No Hit
ACCAGGTCCAGACATAGTAAGGATTGACAGACTGAGAGCTCTTTCTTGAT440150.2244079929523195No Hit
AACTTACCAGGTCCAGACATAGTAAGGATTGACAGACTGAGAGCTCTTTC434920.22174150697449233No Hit
CCCATCACGATGAAATTTCAAAAGATTACCCGGGCCTGTCGGCCAAGGCT427680.21805023384266273No Hit
CTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGA426070.21722938443075038No Hit
TCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTA423780.21606184085728491No Hit
CCCGGAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGTGTCCTAA414400.21127950080527366No Hit
CCCCGACTGTCCCTGTTAATCATTACTCCGGTCCCGAAGGCCAACACAAT389660.19866595145700516No Hit
CTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAGCGCCGGTGGTGCGG372960.19015155072474632No Hit
CCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTG361080.18409459978467232No Hit
CCGAAGGCCAACACAATAGGACCGAAATCCTGTGATGTTATCCCATGCTA356850.18193795816207026No Hit
CCCGTCACCACCACAGTAGGCCCCTATCCTACCGTCGAAAGTTGATAGGG354710.18084689124188855No Hit
CGAGGATCCATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCA347170.17700266480349147No Hit
CAGGTCCAGACATAGTAAGGATTGACAGACTGAGAGCTCTTTCTTGATTC347140.1769873694728347No Hit
CTCAAACTTCCGTGGCCTAAACGGCCATAGTCCCTCTAAGAAGCTGGCCG341750.1742393083981715No Hit
CCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT331350.16893692710383065No Hit
CTTCCGTCAATTCCTTTAAGTTTCAGCCTTGCGACCATACTCCCCCCGGA328680.1675756426753797No Hit
CCAACTTTCGTTCTTGATTAATGAAAACATCCTTGGCAAATGCTTTCGCA322990.16467462829414897No Hit
CTACGAGTCTGGTAATTGGAATGAGTACAATCTAAATCCCTTAACGAGGA322780.16456756097955175No Hit
CAGAAATTTGAATGATGCGTCGCCGGCACATGGGCCGTGCGATCCGTCGA321640.16398633841459512No Hit
CCCCGGAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGTGTCCTA319280.16278310573626392No Hit
CTCGTCCCTTCTGCCGGCGATTCGTGCCTTGCCTTAACTGGCCGGGCCGC313810.15999425711318274No Hit
TGTTAATCATTACTCCGGTCCCGAAGGCCAACACAATAGGACCGAAATCC305150.15557900499693353No Hit
CTGTGATGTTATCCCATGCTAATGTATCCAGAGCGTAGGCTTGCTTTGAG304900.15545154390812727No Hit
CCCCTATCCTACCGTCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGT299490.15269328594635956No Hit
CCCTGTTAATCATTACTCCGGTCCCGAAGGCCAACACAATAGGACCGAAA299000.1524434622122993No Hit
CGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCT292660.1492110490001723No Hit
CCCTATCCTACCGTCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTC288650.1471665731357197No Hit
GCGGTGTGTACAAAGGGCAGGGACGTAGTCAACGCGAGCTGATGACTCGC284720.14516288481968512No Hit
CTTGGGATGGGCCGGCCGGTCCGCCTCTGGGTGTGCACCGGTCGTCTCGT284210.14490286419852036No Hit
GCCGCAGGCTCCACTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGTTT274580.13999306305770282No Hit
CAAAGGGCAGGGACGTAGTCAACGCGAGCTGATGACTCGCGATTACTAGG272830.13910083543605892No Hit
CGCGGCTGCTGGCACCAGACTTGCCCTCCAATGGATCCTCGTTAAGGGAT270960.13814742649178802No Hit
AAACTTACCAGGTCCAGACATAGTAAGGATTGACAGACTGAGAGCTCTTT268500.1368932093779343No Hit
CTGTTAATCATTACTCCGGTCCCGAAGGCCAACACAATAGGACCGAAATC268140.13670966541005328No Hit
CTTGATTAATGAAAACATCCTTGGCAAATGCTTTCGCAGTTGTTCGTCTT256250.13064761602642705No Hit
CCGGGCTCTACGAGTCTGGTAATTGGAATGAGTACAATCTAAATCCCTTA254690.12985225883227594No Hit
CTCAAAGATTAAGCCATGCATGTGTAAGTATGAACTAATTCAGACTGTGA249610.12726224950773252No Hit
CTAATTCAGACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATAGTTT248660.1267778973702687No Hit
CAAACCCCGACTTCTGGAAGGGATGCATTTATTAGATAAAAGGTCGACGC248450.12667083005567142No Hit
TGAAAACATCCTTGGCAAATGCTTTCGCAGTTGTTCGTCTTTCATAAATC245090.12495775302211518No Hit
CCGGCCGGTCCGCCTCTGGGTGTGCACCGGTCGTCTCGTCCCTTCTGCCG244980.12490167014304039No Hit
CGGGGAGGTAGTGACAATAAATAACAATACCGGGCTCTACGAGTCTGGTA242360.12356587793235069No Hit
TAAGGATTGACAGACTGAGAGCTCTTTCTTGATTCTATGGGTGGTGGTGC241220.1229846553673941No Hit
CGAGTCTGGTAATTGGAATGAGTACAATCTAAATCCCTTAACGAGGATCC240340.12253599233479602No Hit
TTCGTGCCTTGCCTTAACTGGCCGGGCCGCACCACCGGCGCTGTTACTTT235250.11994088456670035No Hit
CGCTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGACTTGCCCTCC230820.11768227407305326No Hit
GTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTTAA227290.11588252349910871No Hit
TAAAAAGCTCGTAGTTGGACCTTGGGATGGGCCGGCCGGTCCGCCTCTGG226580.1155205340068989No Hit
CAAAGATTAAGCCATGCATGTGTAAGTATGAACTAATTCAGACTGTGAAA224630.11452633751421No Hit
CTGCGAATGGCTCATTAAATCAGTTATAGTTTGTTTGATGGTATCTTCTA223020.11370548810229761No Hit
TGTGTACAAAGGGCAGGGACGTAGTCAACGCGAGCTGATGACTCGCGATT221960.11316505308575904No Hit
GTTTGTTTGATGGTATCTTCTACTCGGATAACCGTAGTAATTCTAGAGCT221170.11276227604513121No Hit
CGTCAATTCCTTTAAGTTTCAGCCTTGCGACCATACTCCCCCCGGAACCC220260.1122983176818764No Hit
CCAGGTCCAGACATAGTAAGGATTGACAGACTGAGAGCTCTTTCTTGATT214250.10923415310697365No Hit
TGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCC212130.10815328307389649No Hit
CCAGAGCGTAGGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAGCG210410.10727635078290934No Hit
CTAATTCTCCGTCACCCGTCACCACCACAGTAGGCCCCTATCCTACCGTC209530.10682768775031126No Hit
GTAAGTATGAACTAATTCAGACTGTGAAACTGCGAATGGCTCATTAAATC207420.10575191616078634No Hit
CTCGTAGTTGGACCTTGGGATGGGCCGGCCGGTCCGCCTCTGGGTGTGCA206890.10548169865251707No Hit
CTTGGATTTATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTT204250.10413570955472284No Hit
CCCCATCACGATGAAATTTCAAAAGATTACCCGGGCCTGTCGGCCAAGGC204030.10402354379657332No Hit
CTCATTCCAATTACCAGACTCGTAGAGCCCGGTATTGTTATTTATTGTCA203920.10396746091749856No Hit
CGTCGAGTTATCATGAATCATCGGAGCGACGGGCAGAGCCCGCGTCGACC203460.10373293251409502No Hit
TGAAATTTCAAAAGATTACCCGGGCCTGTCGGCCAAGGCTATAGACTCGT198740.10132646715743264No Hit
CTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTATGAACTAATTCAGAC196220.10004165938226543No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)