FastQCFastQC Report
Tue 19 Dec 2023
SRR12391904_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR12391904_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19613829
Sequences flagged as poor quality0
Sequence length35-151
%GC50

[WARN]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAA2156171.0993111034056635No Hit
CTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAG1425360.7267117501636218No Hit
CTTACCAGGTCCAGACATAGTAAGGATTGACAGACTGAGAGCTCTTTCTT1097610.5596102627386014No Hit
CCCGACTGTCCCTGTTAATCATTACTCCGGTCCCGAAGGCCAACACAATA1092780.5571477145028643No Hit
CCGGAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGTGTCCTAAG1083550.5524418511041368No Hit
CTCCAATGGATCCTCGTTAAGGGATTTAGATTGTACTCATTCCAATTACC855440.4361412552337435No Hit
CCCAACTTTCGTTCTTGATTAATGAAAACATCCTTGGCAAATGCTTTCGC772390.3937986815323005No Hit
TGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGT660150.33657375110183735No Hit
CAGGGACGTAGTCAACGCGAGCTGATGACTCGCGATTACTAGGAATTCCT602100.3069772862810214No Hit
CCGCAGGCTCCACTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGTTTC578050.29471552953785823No Hit
CCCCAACTTTCGTTCTTGATTAATGAAAACATCCTTGGCAAATGCTTTCG566790.2889746820980238No Hit
CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATT532500.27149211915735577No Hit
CCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCACAGTAGGCCC481200.24533710373430911No Hit
CCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT478100.24375658623311133No Hit
CTTGTTACGACTTCTCCTTCCTCTAAATGATAAGGTTCAGTGGACTTCTC473940.241635633715375No Hit
CTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGA471660.24047318858546182No Hit
TTACCAGGTCCAGACATAGTAAGGATTGACAGACTGAGAGCTCTTTCTTG438890.2237655890647359No Hit
CCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTG435930.2222564497732697No Hit
CCCCGACTGTCCCTGTTAATCATTACTCCGGTCCCGAAGGCCAACACAAT420090.21418051518650436No Hit
CCCGGAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGTGTCCTAA417110.21266117900793363No Hit
CGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCT397490.20265803275841757No Hit
CCTAATTCTCCGTCACCCGTCACCACCACAGTAGGCCCCTATCCTACCGT393420.20058296623265146No Hit
CTTCCGTCAATTCCTTTAAGTTTCAGCCTTGCGACCATACTCCCCCCGGA385510.19655009738282106No Hit
GCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTA380690.19409264759063619No Hit
CGCGGCTGCTGGCACCAGACTTGCCCTCCAATGGATCCTCGTTAAGGGAT379760.19361849234027687No Hit
AACTTACCAGGTCCAGACATAGTAAGGATTGACAGACTGAGAGCTCTTTC361120.18411499355888133No Hit
CCCCGGAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGTGTCCTA358860.18296274531607265No Hit
CGGGGAGGTAGTGACAATAAATAACAATACCGGGCTCTACGAGTCTGGTA358670.1828658748885799No Hit
ACCAGGTCCAGACATAGTAAGGATTGACAGACTGAGAGCTCTTTCTTGAT355860.1814332122503974No Hit
CCCGTCACCACCACAGTAGGCCCCTATCCTACCGTCGAAAGTTGATAGGG353100.1800260418299762No Hit
CCCATCACGATGAAATTTCAAAAGATTACCCGGGCCTGTCGGCCAAGGCT351300.17910832199057103No Hit
CCCTGTTAATCATTACTCCGGTCCCGAAGGCCAACACAATAGGACCGAAA346470.1766457737548339No Hit
GCGGTGTGTACAAAGGGCAGGGACGTAGTCAACGCGAGCTGATGACTCGC319440.16286468083309993No Hit
TCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTA310460.15828627852317873No Hit
CTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAGCGCCGGTGGTGCGG308820.1574501337806096No Hit
CTCCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCACAGTAGGC308430.1572512944820718No Hit
CCGAAGGCCAACACAATAGGACCGAAATCCTGTGATGTTATCCCATGCTA307090.15656810304607022No Hit
GCCGCAGGCTCCACTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGTTT301220.15357531668089897No Hit
CAGGTCCAGACATAGTAAGGATTGACAGACTGAGAGCTCTTTCTTGATTC297740.1518010583247157No Hit
TCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAA297170.1515104470422374No Hit
CCCCTATCCTACCGTCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGT295250.15053154588020526No Hit
CTGTGATGTTATCCCATGCTAATGTATCCAGAGCGTAGGCTTGCTTTGAG283590.1445867606982808No Hit
CGAGGATCCATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCA279420.1424607097369922No Hit
CCAACTTTCGTTCTTGATTAATGAAAACATCCTTGGCAAATGCTTTCGCA277780.14162456499442305No Hit
CTCAAACTTCCGTGGCCTAAACGGCCATAGTCCCTCTAAGAAGCTGGCCG269520.13741325062026388No Hit
CGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCC263920.13455812223100344No Hit
TGTTAATCATTACTCCGGTCCCGAAGGCCAACACAATAGGACCGAAATCC258830.13196301446290779No Hit
CTCCGTCACCCGTCACCACCACAGTAGGCCCCTATCCTACCGTCGAAAGT252070.12851646662158622No Hit
CAAAGGGCAGGGACGTAGTCAACGCGAGCTGATGACTCGCGATTACTAGG245620.12522797053038445No Hit
CCCCATCACGATGAAATTTCAAAAGATTACCCGGGCCTGTCGGCCAAGGC245540.12518718298196646No Hit
CCCTATCCTACCGTCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTC244030.12441731800557658No Hit
CGCTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGACTTGCCCTCC239680.12219949506034747No Hit
CTACGAGTCTGGTAATTGGAATGAGTACAATCTAAATCCCTTAACGAGGA239520.12211791996351146No Hit
GTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTAATCGTCTTCGAG239310.12201085264891419No Hit
CTGTTAATCATTACTCCGGTCCCGAAGGCCAACACAATAGGACCGAAATC234210.11941064643726629No Hit
CCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTAATCGTCT232670.11862548613021966No Hit
ACTTACCAGGTCCAGACATAGTAAGGATTGACAGACTGAGAGCTCTTTCT231940.11825329975090534No Hit
CTTGATTAATGAAAACATCCTTGGCAAATGCTTTCGCAGTTGTTCGTCTT231830.11819721687183059No Hit
CGGCATCGTTTATGGTTGAGACTAGGACGGTATCTAATCGTCTTCGAGCC226990.1157295701925412No Hit
AAACTTACCAGGTCCAGACATAGTAAGGATTGACAGACTGAGAGCTCTTT224090.11425102156238846No Hit
CGGGCGGTGTGTACAAAGGGCAGGGACGTAGTCAACGCGAGCTGATGACT224040.11422552934462721No Hit
CCGGGCTCTACGAGTCTGGTAATTGGAATGAGTACAATCTAAATCCCTTA221180.11276737448868347No Hit
CTCGTCCCTTCTGCCGGCGATTCGTGCCTTGCCTTAACTGGCCGGGCCGC218720.11151315737482977No Hit
TGAAAACATCCTTGGCAAATGCTTTCGCAGTTGTTCGTCTTTCATAAATC212020.10809720019482173No Hit
CCTGTTAATCATTACTCCGGTCCCGAAGGCCAACACAATAGGACCGAAAT204790.10441102550654438No Hit
CTTGGGATGGGCCGGCCGGTCCGCCTCTGGGTGTGCACCGGTCGTCTCGT201680.10282540956179438No Hit
TGTGTACAAAGGGCAGGGACGTAGTCAACGCGAGCTGATGACTCGCGATT200260.10210143057737477No Hit
ATCGTTTATGGTTGAGACTAGGACGGTATCTAATCGTCTTCGAGCCCCCA198590.10124999050414889No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)