章成君

姓  名: 章成君
学  科: 生物信息学
电话/传真: 0871-65230869
电子邮件: zhangchengjun[at]mail.kib.ac.cn
通讯地址: 云南省昆明市盘龙区蓝黑路132号中国科学院昆明植物研究所 650201
 
学习教育经历:
本科:
华中农业大学 生物技术专业 2001.9-2005.7;
武汉大学(双学位) 计算机科学与技术 2003.3-2006.7
硕博连读:
华中农业大学 作物遗传改良国家重点实验室 新基因起源、分子演化理论和计算 2005.9-2011.7
 
工作经历:
博士后:
芝加哥大学 生态与演化系 新基因起源与基因组演化 2011.9-2014.8
研究员:
中科院昆明植物研究所 中国西南野生生物种质资源库 植物基因组演化
 
研究领域:
1. 禾本科植物基因组演化
2. 独行菜属基因组演化及基因功能研究
3. 生物信息学
 
代表论著:
1. Nayidu NK, Wang L, Xie W, Zhang C, Fan C, Lian X, Zhang Q, Xiong L# (2008) Comprehensive sequence and expression profile analysis of PEX11 gene family in rice. Gene 412:59-70.
2. Nuruzzaman M, Gupta M, Zhang C, Wang L, Xie W, Xiong L, Zhang Q and Lian X# (2008) Sequence and expression analysis of the thioredoxin protein gene family in rice. MGG 280:139-151.
3. Gupta M, Qiu X, Wang L, Xie W, Zhang C, Xiong L, Lian X, Zhang Q# (2008) KT/HAK/KUP potassium transporters gene family and their whole-life cycle expression profile in rice (Oryza sativa). MGG 280:437-52.
4. Xie W, Chen Y, Zhou G, Wang L, Zhang C, Zhang J, Xiao J, Zhu T, Zhang Q# (2009) Single feature polymorphisms between two rice cultivars detected using a median polish method. Theor Appl Genet 119:151-164.
5. Xia J#, Hu X, Shi F, Niu X and Zhang C (2010) Support vector machine method on predicting resistance gene against Xanthomonas oryzae pv. oryzae in rice. Expert Systems with Applications 37:5946-5950.
6. Du H, Ouyang Y, Zhang C, Zhang Q# (2011) Complex evolution of S5, a major reproductive barrier regulator, in the cultivated rice Oryza sativa and its wild relatives, New Phytologist, 2011, 191:275-287.
7. Zhang C, Wang J, Xie W, Zhou , Long M , Zhang Q# (2011) Dynamic programming procedure for searching optimal models to estimate substitution rates based on the maximum-likelihood method, Proc Natl Acad Sci USA, 2011, 108(19):7860-7865.
8. Hu Y, Liu D, Zhong X, Zhang C, Zhang Q, Zhou DX# (2012) CHD3 protein recognizes and regulates methylated histone H3 lysines 4 and 27 over a subset of targets in the rice genome, Proc Natl Acad Sci USA, 109(15): 5773-5778.
9. Zhou G, Chen Y, Yao W, Zhang C, Xie W, Hua J, Xing Y, Xiao J, and Zhang Q# (2012) Genetic composition of yield heterosis in an elite rice hybrid, Proc Natl Acad Sci USA, 109(39):15847-15852.
10. Zhang C*, Wang J*, Long M, Fan C# (2013) gKaKs: The pipeline for genome level Ka/Ks calculation, Bioinformatics, doi: 10.1093/bioinformatics/btt009.
11. Yan W, Liu H, Zhou X, Li Q, Zhang J, Lu L, Liu T, Liu H, Zhang C, Zhang Z, Shen G, Yao W, Chen H, Yu S, Xie W, Xing Y# (2013) Natural variation in Ghd7.1 plays an important role in grain yield and adaptation in rice, Cell Research, doi: 10.1038/cr.2013.43
12. Zhang C*, Wang J*, Marowsky NC, Long M, Rod AW#, Fan C# (2013) High Occurrence of Functional New Chimeric Genes in Survey of Rice Chromosome 3 Short Arm Genome Sequences, Genome Biology and Evolution, doi: 10.1093/gbe/evt071
13. Zhang C, Gschwend RA, Ouyang Y, Long M# (2014) , Evolution of gene structural complexity: An alternative-splicing based model accounts for intron-containing retrogenes, Plant Physiology, doi: 10.1104/pp.113.231696
 
承担科研项目情况:
  • 海外杰出人才 引进启动项目(禾本科基因组分析平台搭建及其新基因演化机制研究)100万;
  • 2016年国家自然科学基金面上项目(禾本科基因组嵌合基因形成机制研究及功能初探)60万;
  • 中国科学院“百人计划”支持 200万;
  • 公司横向课题 15万
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