RNA-Results(Differential analysis)

This page mainly presents the expression results obtained through the difference analysis of RNA-seq

PRJNA949780

Instrument : Illumina NovaSeq 6000

SRA Experiments : 4

Submitted by: Yunnan Academy of Forestry and Grassland
Registration date: 28-Mar-2023

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PRJNA949214

Overall design: RNA-Seq technology was used to compare the transcriptomic profiles of the avocado callus tolerant line L3 (capable to survive in the presence of 80% CF) and control line AN-9 (not exposed to CF), after 24 hours of growth in a medium containing 40% CF.

Instrument : Illumina NovaSeq 6000

SRA Experiments : 12

Submitted by: Biotechnology, Department of Genomics and Biotechnology, IFAPA
Registration date: 27-Mar-2023

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PRJNA412534

TRANSCRIPTOMIC ANALYSIS OF AVOCADO HASS FRUIT (Persea americana Mill) IN THE INTERACTION SYSTEM AVOCADO FRUIT-CHITOSAN

Instrument : Illumina NovaSeq 6000

SRA Experiments : 8

Submitted by: Instituto Tecnologico de Tepic and LANGEBIO
Registration date: 28-Sep-2017

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PRJNA872195

Overall design: This study aims to analyze the avocado transcriptome in interaction with highly polymerized agave fructans to see the molecular response of the fruit.

Instrument : Illumina NovaSeq 6000

SRA Experiments : 24

Submitted by: Instituto Tecnologico Nacional de Mexico campus Tepic
Registration date: 22-Aug-2022

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PRJNA655460

Overall design: In this work, we established an in vitro pathosystem using Hass avocado stems inoculated with Fusarium kuroshium to investigate differential gene expression during 1,4, 7- and 14-days post inoculation.

Instrument : Illumina NextSeq 500

SRA Experiments : 24

Submitted by: Instituto de Ecologia A.C. (INECOL)
Registration date: 5-Aug-2020

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PRJNA551035

Overall design: Transcriptome experiment to show the molecular mechanisms that are used by the avocado to perceive and react to the oviposition of Anastrepha ludens.

Instrument : Illumina NextSeq 500

SRA Experiments : 24

Submitted by: Instituto de Ecologia A.C. (INECOL)
Registration date: 25-Jun-2019

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PRJNA849223

Overall design: Response mechanisms of Hass avocado under 1_methylcyclopropene (1_MCP) application at different maturity stages during cold storage

Instrument : Illumina HiSeq 4000

SRA Experiments : 36

Submitted by: Agrigenomics Lab
Registration date: 14-Jun-2022

Published online: Olivares D et al., "Response Mechanisms of “Hass” Avocado to Sequential 1–methylcyclopropene Applications at Different Maturity Stages during Cold Storage", Plants, 2022;11(13)

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