Welcome to download data! All of data are available!
| Date Type | Local Download | |
|---|---|---|
| Genome | Persea_americana_ncbi_genomic.fna.gz | |
| Gene annotation | Persea_americana_ncbi_gff.gz | |
| CDS | Persea_americana_ncbi_cds.fna.gz | |
| Protein | Persea_americana_ncbi_pep.faa.gz | |
| Genebank | Persea_americana_ncbi_gbff.gz |
Publication: Nath, O., Fletcher, S. J., Hayward, A., Shaw, L. M., Masouleh, A. K., Furtado, A., Henry, R. J., & Mitter, N. A haplotype resolved chromosomal level avocado genome allows analysis of novel avocado genes . Hortic Res. 2022 Mar 30:9:uhac157. doi: 10.1093/hr/uhac157.
| Date Type | Download |
|---|---|
| Genome | Persea_americana_t2t.fa.tar.gz |
| Gene annotation | Persea_americana_t2t.gff3.tar.gz |
| CDS | Persea_americana_t2t.cds.fasta.tar.gz |
| Protein | Persea_americana_t2t.pep.fasta.tar.gz |
Publication: Yang, T., Cai, Y., Huang, T., Yang, D., Yang, X., Yin, X., Zhang, C., Yang, Y., & Yang, Y. A telomere-to-telomere gap-free reference genome assembly of avocado provides useful resources for identifying genes related to fatty acid biosynthesis and disease resistance . Hortic Res. 2024 Apr 22;11(7):uhae119. doi: 10.1093/hr/uhae119.
| Date Type | Download |
|---|---|
| Genome | Persea_americana_drymifolia.fna.tar.gz |
| Date Type | Download |
|---|---|
| Genome | Persea_americana_Gwen.fna.tar.gz |
| Date Type | Download |
|---|---|
| Genome | Populus_trichocarpa_genomic.fna.tar.gz |
| Gene annotation | Populus_trichocarpa.gff3.tar.gz |
| CDS | Populus_trichocarpa.cds.fa.tar.gz |
| Protein | Populus_trichocarpa.pep.fa.tar.gz |
Publication: Zhou XJ, Li JT, Wang HL, Han JW, Zhang K, Dong SW, Zhang YZ, Ya HY, Cheng YW, Sun SS. The chromosome-scale genome assembly, annotation and evolution of Rhododendron henanense subsp. lingbaoense. Mol Ecol Resour. 2021 Oct 15; doi: 10.1111/1755-0998.13529.
| Date Type | Download |
|---|---|
| Genome | Arabidopsis_thaliana_genomic.fa.tar.gz |
| Gene annotation | Arabidopsis_thaliana.gff3.tar.gz |
| CDS | Arabidopsis_thaliana.cds.fa.tar.gz |
| Protein | Arabidopsis_thaliana.pep.fa.tar.gz |
Publication: Soza VL, Lindsley D, Waalkes A, Ramage E, Patwardhan RP, Burton JN, Adey A, Kumar A, Qiu R, Shendure J, Hall B. The Rhododendron Genome and Chromosomal Organization Provide Insight into Shared Whole-Genome Duplications across the Heath Family (Ericaceae) . Genome Biol Evol. 2019 Dec 1; 11(12): 3353-3371. doi: 10.1093/gbe/evz245.
| Data Type | Download |
|---|---|
| Species Tree | Persea_arericana_filter.dis.tree |
| TPS Genefamily Tree | Persea_americana_tps_genefamily.tree |
| Data type | Download |
|---|---|
| Persea americana biosamples results | Persea_americana_Biosamples_results.zip |
| Species | Download |
|---|---|
| Persea americana (T2T) VS Populus trichocarpa | Pa_Pt_collinearity.zip |
| Persea americana (T2T) VS Arabidopsis thaliana | Pa_At_collinearity.zip |
| Persea americana (T2T) VS Persea americana (T2T) | Pa_T2T_self_collinearity.zip |
| Species | Download |
|---|---|
| Persea americana (T2T) | Pa_t2t_gene_density.txt |
| Persea americana (NCBI) | Pa_ncbi_gene_density.txt |
| Populus trichocarpa | Pt_gene_density.txt |
| Arabidopsis thaliana | At_gene_density.txt |
