RNA-Results(Nondifferential analysis)

This page stores the expression results of projects in RNA-seq that are not differentially processed

PRJNA1027005

Chile is a key avocado producer with high-quality fruit product at global level, but drought-issues have made avocado cultivation difficult, reducing production. Clonal rootstocks usage promises to produce more productive, uniform and predictable crops, although in terms of fruit quality the results are controversial. For these reasons, using transcriptomics we compared Hass avocado trees grown on seedling and clonal rootstocks in a soilless and protected system as a strategy to maintain the competitiveness of Chilean market facing drought.

Instrument : Illumina NovaSeq 6000

SRA Experiments : 12

Submitted by: Pontificia Universidad Catolica de Valparaiso
Registration date: 11-Oct-2023

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PRJNA483022

Raw reads from mesocarp of Persea americana.

Instrument : Illumina NovaSeq 6000

SRA Experiments : 12

Submitted by: Universidad Andres Bello
Registration date: 26-Jul-2018

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PRJNA562115

The Litsea genome and the evolution of the laurel family (Lauraceae)

Instrument : Illumina NovaSeq 6000

SRA Experiments : 4

Submitted by: Chinese Academy of Forestry
Registration date: 26-Aug-2019

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PRJNA660369

Short de-etiolation increases the rooting of VC801 Avocado rootstock

Instrument : Illumina NovaSeq 6000

SRA Experiments : 12

Submitted by: ARO
Registration date: 31-Aug-2020

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PRJNA675400

Phytophthora cinnamomi is an oomycete pathogen of global relevance. It has caused irreversible damage to natural ecosystems and horticultural crops. One of the goals of this study was to generate a high quality genome. The lack of a good quality genome sequence has been a setback for various genetic and genomic research to be done on this species. As a consequence, little is known regarding its genome characteristics and how these contribute to its pathogenicity and invasiveness.

Instrument : Illumina NextSeq 500

SRA Experiments : 34

Submitted by: University of Pretoria
Registration date: 9-Nov-2020

Publications : Engelbrecht J et al., "Genome of the destructive oomycete Phytophthora cinnamomi provides insights into its pathogenicity and adaptive potential.", BMC Genomics, 2021 Apr 26;22(1):302

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PRJNA803253

Gene expression analysis revealed a total of 5958 differentially expressed genes (DEGs), being 3344 in control treatments, 2920 in RA and 2627 in CA storage. In total 45 candidate genes were also found to be related to blackspot disorder.

Instrument : Illumina NextSeq 500

SRA Experiments : 6

Submitted by: Pontificia Universidad Catolica de Valparaiso
Registration date: 3-Feb-2022

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